Viruses
may be defined as “acellular” organisms whose
genomes1 consist of nucleic acid, and which obligately2
replicate (duplicate themselves) inside host cells using
the
host’s metabolic machinery and ribosomes to form
a pool
of components which they can assemble into particles
called VIRIONS3. The virons serve to protect the genome
and to facilitate its transfer to other cells.
By older, more zoologically and botanically biased criteria,
then, viruses are not living organisms. However, because
they most definitely replicate, their evolution can (within
limits) be traced and they are independent in terms of
not
being limited to a single organism (host), or even
necessarily to a single species, genus or phylum of host,
Therefore, in this sense, they must be considered
“living” even though they cannot replicate
without infecting a host organism.
A virus is not alive…nor is it dead
A virus is not a bacterium, nor, as we have described,
an independently-living organism. A virus cannot
survive in the absence of a living host cell in which
it can synthesize copies of itself (replicate). Viruses
are
not made of cells, do not eat and do not grow.
Antibiotics, which operate extra-cellularly (outside of
a cell) obviously do not harm a virus. It is for this
reason that treatments for the "flu", for example,
mainly to help ease the symptoms of the illness rather
than killing the organism which causes the "flu"
(An influenza virus is pictured above left.)
A virus has fundamental information (genes made of DNA
or RNA) that allows it to make copies of itself.
However, the virus must be inside a living cell of some
kind before the information can be used. In fact,
this encoded information won't be made available unless
the virus enters a living cell. When a virus enters
into a cell, we call this a “viral infection”.
The virus is very, very small relative to the size of
a living cell.
Therefore, the information the virus carries is actually
not enough to allow it to make copies of itself
(replicate). So, the virus uses the cell's machinery,
and some of the invaded cell's enzymes, to create virus
parts which are later assembled into thousands of new,
mature, infectious viruses that can leave the host
cell to infect other cells. Poliomyelitis virus, for example,
may make over one million copies of its basic
genetic information (RNA) inside a single, infected human
intestinal cell!
Moving from the outside to the inside, here
are some of the common parts of a virus:
Capsid (core, genetic material - DNA or
RNA: The capsid is the outer shell of the
virus which encloses the genetic material
within. The capsid is actually made of many,
many identical individual proteins that are
assembled very precisely to form the capsid
structure. Sometimes there will be a protein
core underneath the capsid that also
surrounds the genetic material.
Envelope: Some viruses may have an
additional covering on the outside called a
liquid envelope. An envelope is kind of like
skin around the outside of the virus. The
envelope is actually a lipid bilayer
(membrane) with proteins embedded within
the membrane. If you examine a baseball,
and take it apart, you will see how some viruses are assembled.
The cover of the baseball (envelope), the
tightly-woven thread (capsid), and the rubber core (genetic
material) can be used to represent the parts of
some viruses.
All viruses only exist to make more viruses.
With the possible exception of bacterial viruses, which
kill harmful bacteria, all viruses appear to be
harmful because their replication leads to the death of
the host cell that the virus has invaded.
A virus enters the cell by first attaching to a specific
structure on the cell's surface using a specific structure
on the virus surface. Depending on the virus, either the
entire virus enters the cell, or perhaps only the
genetic material of the virus is injected into the cell.
In either case however, the ultimate result of viral
infection is the spread of virus genetic material inside
the host cell. Then, the virus material essentially
"takes over" the cell and nothing but viral
parts are made, which assemble themselves into many more
complete viruses. These viruses are mature and leave the
cell either by a process called "budding", (where
just one or a few viruses at a time leave the cell), or
by a process called “lysis”, (where the cellular
membrane ruptures and releases all of the virus particles
at once). A complete explanation of the process
is described in detail below.
Types of Virus Life Cycles:
Lytic cycle
1. The virus injects genetic material into the host’s
cell.
2. The virus forces host cell’s DNA to make more
viral DNA.
3. The host cell makes more copies of the virus protein
coat and assembles new viruses.
4. The host cell swells with new viruses particles and
bursts open, releasing many new viral particles
that spread to infect other cells.
lysogenic cycle
1. The virus injects DNA into host cell BUT does not start
making new viruses right away.
2. The viral DNA is incorporated into the host cell’s
DNA (the viral DNA is now called a provirus.)
3. Every time the host cell DNA is copied before mitosis
(cell division), the viral DNA is also copied.
4. At some point, the viral DNA becomes active and takes
over all the host cells and then instructs
the host cell to make more viruses.
Humans have some protection from viruses
If a particular virus infects one or more cells in tissues
in the body, the infection leads to the synthesis and
secretion of substances called “interferons”.
Interferons are proteins and may be designated as alpha,
beta, or gamma interferon proteins. These proteins interact
with the cells that are adjacent to infected
cells and help these adjacent cells become more resistant
to infection by the virus. (An interferon
molecule is pictured below left.)
Sometimes, this resistance isn't quite good
enough to prevent the spread of the virus to
more and more cells, and we begin to feel
sick. Now, however, the body's immune
system takes over and begins to fight the virus
infection by killing the virus as it leaves the
cells (on the outside of the cells), Immune
cells also destroy infected cells. This is
accomplished by our body’s “front line”
warriors called “white blood cells” or “T
cells”.
(See picture at right of a white blood cell
surrounded by red blood cells.)
The killing of infected cells prevents the spread of the
virus, since as was
stated above, a virus requires a living cell in order
for the virus to be able
to replicate. Eventually, a virus will be completely removed,
and we are
able get over the illness.
In some cases, however, we do not regain control over
virus infections.
HIV is an exception to this situation because HIV infects
the cells of the
immune system which are needed to kill infected cells.
So, although HIV
does not itself directly cause the condition known as
AIDS, the eventual
death of immune cells, because of the virus infection,
allows other
infections to harm a person. Herpes simplex is another
virus that infects
the immune system. (See Herpes virus pictured at left.)
Virus Replication
Genomes of RNA or DNA viruses exist in a considerable
variety of sizes and shapes, from small molecules
of single-stranded RNA or DNA to large double-stranded
molecules that may be linear or circular.
Whatever their physical nature, viral RNA or DNA molecules
must be replicated efficiently within an
infected cell to provide genomes for assembly into progeny
virions. Steps in the Replicative Cycle of
viruses are still composed of six major steps:
1. Attachment or Adsorption
2. Penetration
3. Uncoating
4. Biosynthesis
5. Assembly
6. Release
Maturation
1. ATTACHMENT or ADSORPTION
Virus attachment occurs when a VIRAL ATTACHMENT PROTEIN
(VAP) binds to a cellular RECEPTOR. Many
examples of virus receptors are now known. Receptor molecules
may be proteins (usually glycoproteins -
specific molecules), or the sugar residues present on
glycoproteins or glycolipids (less specific). Some
complex viruses (like the Poxviruses and Herpes viruses)
may have more than one receptor or receptorbinding
protein, therefore, there may be alternative routes that
the virus takes into cells.
The expression (or absence) of receptors on the surface
of cells largely determines the TROPISM of most
viruses. (TROPISM refers to the type of cell in which
viruses are able to replicate.) Attachment is, in most
cases, a reversible process. If virus penetration does
not occur, the virus can release itself from the cell’s
surface to try and find a new host cell to invade.
2. PENETRATION
Unlike attachment, viral penetration is an energy-dependent
process. This means that the cell must be
metabolically active for this to occur. Three mechanisms
may be involved:
1. TRANSLOCATION (the complete penetration) of the entire
virion through the host cell’s membrane,
2. ENDOCYTOSIS of the virus into intracellular vacuoles;
eventually into the cytoplasm. (“Endocytosis”
is a process of cellular ingestion by which the plasma
membrane of the host cell folds inward to
allow the virus into the cell.)
3. FUSION of the viral envelope with the cell membrane.
This requires the presence of a viral fusion
protein in the virus envelope.
3. UNCOATING
“Uncoating” is a general term that explains
the events that occur after viral penetration. First,
the capsid is
removed and the virus genome is exposed, usually in the
form of a nucleoprotein complex. This might be
relatively simple in structure. Picorna viruses, for example,
have a small basic protein of only 23 amino
acids. Retrovirus cores are highly ordered nucleoprotein
complexes which contain, in addition to the RNA
genome, other enzymes responsible for converting the viral
RNA genome into the DNA PROVIRUS. This
process occurs inside the core particle. They can contain
hundreds of amino acids.
For viruses which replicate in the cytoplasm, like the
Picorna viruses, the genome is simply released into
the cell. But for viruses which replicate in the nucleus,
like the Herpes viruses, the genome, often with
associated nucleoproteins, must be transported through
the nuclear membrane. At the nuclear pores, the
capsid is stripped off by the virus, and the virus genome
passes directly into the nucleus.
4. BIOSYNTHESIS: GENOME REPLICATION & GENE
EXPRESSION
The replication strategy of the virus depends on the nature
of its genome. Viruses can be classified into
seven (arbitrary) groups:
1: Double-stranded DNA (Adeno viruses, Herpes viruses,
Pox viruses Adenoviruses are a group
of viruses that typically cause respiratory illnesses
such as a common cold, conjunctivitis, (an infection in
the eye), croup, bronchitis, or pneumonia. In children,
adenoviruses usually cause infections in the
respiratory and intestinal tract.
2: Single-stranded (+) sense DNA (Parvoviruses) Parvoviruses
are some of the smallest viruses
found in nature. (The name comes from the Latin “parvus”
meaning “small”). Parvoviruses can cause
diseases in some animals. Because the viruses require
actively reproducing cells in order to replicate, the
type of tissue infected varies by the age of the animal.
Canine parvovirus is a particularly deadly disease
among young puppies, causing gastrointestinal tract damage
and dehydration as well as a cardiac
syndrome in very young pups. It is spread by contact with
an infected dog's feces. Symptoms include
lethargy, severe diarrhea, fever, vomiting, loss of appetite,
and dehydration. Humans have their own
strain of parvovirus that can spread rapidly from person
to person.
3: Double-stranded RNA (Reoviruses, Birnaviruses, Arboviruses)
The Reoviridae (Respiratory
Enteritic Orphan virus) are a family of viruses that includes
some viruses that affect the gastrointestinal
system (such as Rotavirus), and some that cause respiratory
infections. This virus primarily infects infants
(ages 6 to 24 months). Arboviruses (arthropod-borne viruses)
are a large group of viruses that are spread
mainly by blood-sucking insects. In the United States,
arboviruses are most commonly spread by
mosquitoes. Birds are often the source of infection for
mosquitoes, which can then spread the infection to
horses, other animals, including people. Most people infected
with arboviruses have few or no
symptoms, but arboviruses can cause serious and potentially
fatal inflammation of the brain (encephalitis)
as well as other complications.
4: Single-stranded (+) sense RNA (Picornaviruses, Togaviruses)
Picornaviruses are named
because of their size. (“Pico” in Greek means
“very small”) These RNA viruses' are among
the most
diverse, (with more than 200 serotypes,) and 'oldest'
known viruses. (Temple record from Egypt
from1400 B.C. describe this viral infection.). This viral
strain was one of the first to be recognised by
Loeffler and Frosch in1898. Poliomyelitis is a viral disease
in this family that was first identified by
Landsteiner and Popper in1909 (though the virus was not
isolated until the 1930's. The diseases these
viruses cause are varied, ranging from acute "common-cold"-like
illnesses, to chronic infections in
livestock. Two main categories are enteroviruses and rhinoviruses.
5: Single-stranded (-) sense RNA (Orthomyxoviruses, Rhabdoviruses)
Orthomyxoviruses include
the influenza viruses from the family Orthomyxoviradae.
Various animal species can become infected with
their own specific strains of influenza, and, in some
cases, the animal strains may produce mild infections
in humans. Some of the human strains cause the more explosive
and severe viral infection forms. The
term "flu" is used to refer to a wide variety
of infections, ranging from the common cold to various
forms
of enteritis. Until recently, Togaviruses were classified
in the same family as the Flaviviruses. Modern
molecular techniques allowed virologists to separate the
two families based on gene expression.
Togaviruses are divided into two genera: Alphaviruses
(18 members) and Rubivirus (1 member, Rubella).
The Alphaviruses are arthropod-borne, and Rubella virus,
which causes Rubella or "German Measles" is
transmitted by the respiratory route.
6: Single-stranded (+) sense RNA with DNA intermediate
in life-cycle (Retroviruses)
Retroviruses belong to the Retroviridae family of viruses.
The genetic material of retroviruses consists of
ribonucleic acid (RNA), instead of deoxyribonucleic acid
(DNA). Retroviruses are known to lead to certain
types of cancers in both humans and animals, as well as
a range of viral infections. Human
Immunodeficiency Virus (HIV), the virus that causes Acquired
Immune Deficiency Syndrome (AIDS), is
one example of a retrovirus.
Retroviruses are unique in that they reproduce by transcribing
themselves into DNA. Reverse
transcriptase, an enzyme within a retrovirus, makes it
possible for the retrovirus’ RNA to perform as a
template of sorts for the transcription process. Once
transcription has taken place, the viral DNA gains
access to the DNA of a host cell, reproducing along with
the cell and the cell’s offspring. Within the cell’s
offspring, referred to as daughter cells, the viral DNA
creates RNA replicas of itself. Finally, the RNA
replicas leave the daughter cells after coating themselves
with a protein.
Retroviruses reverse the normal cell process, which uses
RNA to synthesize DNA. By reversing this
process, retroviruses take up permanent residence in the
genetic material of the infected cell. In some
cases, retroviruses destroy the cells they change. Such
is the case with the retrovirus HIV. Other
retroviruses cause cells to become cancerous. This is
what occurs with certain types of leukemia.
Retroviruses are prone to mutation. For this reason, viruses
in this family often become resistant to
antiviral drugs within a relatively short period of time.
This level of mutability is one of the reasons cited
for the difficulty scientists face in trying to develop
a safe and effective HIV vaccine.
7: Double-stranded DNA with RNA intermediate (Hepadnaviruses,
Herpex Simplex viruses)
Hepadnaviruses are a family of viruses that cause liver
infections in humans and animals. Viral replication
is accomplished by tight regulation of gene expression.
The methods used depend on nature of the virus
genome/replication strategy, There are two recognized
genera:
Genus Orthohepadnavirus; type species: Hepatitis B virus
Genus Avihepadnavirus; type species: Duck hepatitis B
virus
5. ASSEMBLY
Assembly occurs when all the components necessary for
the formation of the mature virion are available
at a particular site in the host cell. During this process,
the basic structure of the virus is formed.
The site of assembly varies for different viruses. For
examplem Picornaviruses, Poxviruses and Reoviruses
assemble In the cytoplasm. Adenoviruses, Papovaviruses
and Parvoviruses assemble in the nucleus.
Retroviruses assemble on the inner surface of the host
cell’s membrane.
6. RELEASE
For lytic viruses, (most of non-enveloped viruses), release
is a simple process. The host cell breaks open
and releases the virus. Enveloped viruses merge with the
host cell’s the lipid membrane and the virus

